13 Jun 2024

Successfully defended dissertation thesis

On 31st May, our colleague Veronika Horská successfully defended her dissertation thesis at the Department of Mathematics and Statistics at the Faculty of Science, Masaryk University. Her thesis topic is "Statistical Inference in Survival Analysis Using R and Shiny Application".

12 Jun 2024

AlphaFind was published in an article

AlphaFind, a tool for finding structurally similar proteins stored in AlphaFold DB, was published in the journal Nucleic Acids Research.

3 May 2024

Successfully defended master's thesis

Our colleague Jakub Oršula defended his master's thesis at the Faculty of Informatics, Masaryk University. His thesis topic is "Automatic updates for the protein similarity search application".

4 Apr 2024

Romana's featured structure at PDBe

PDBe's April article, "The buzz behind bee venom therapy," written by PDB annotator Romana, explores the science behind bee venom and its related structures in the PDB, available on the PDBe website.

2 Apr 2024

Successfully defended dissertation thesis

On 24th January, our colleague Ivana Hutařová Vařeková successfully defended her dissertation thesis at the Faculty of Informatics, Masaryk University. The topic of her thesis is "The visualization of secondary structure elements of proteins in 2D".

19 Jan 2024

Successfully defended dissertation thesis

Yesterday, on 18th January, our colleague Ondřej Schindler successfully defended his dissertation thesis at the Faculty of Science, Masaryk University. The topic of his thesis is "Partial atomic charges for proteins".

7 Dec 2023

ChannelsDB 2.0 was published in an article

In 2018, the first version of our ChannelsDB database was published. Now, its second version was made public in the article ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era published in the Database issue of the Nucleic Acids Research journal.

6 Dec 2023

An article was published in collaboration with PDBe

Our colleague, Romana Gáborová, has recently co-authored an article with the Protein Data Bank (PDB) in Europe. The paper deals with current annotation practices (or the lack of such practices in most cases) of macromolecular complex assemblies.