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Publications

The list below shows all publications of the group leader Radka Svobodová.

Total number of publications: 59

2017

  • Four simple recommendations to encourage best practices in research software

    JIMÉNEZ Rafael C KUZAK Mateusz ALHAMDOOSH Monther BARKER Michelle BATUT Bérénice BORG Mikael CAPELLA-GUTIERREZ Salvador HONG Neil Chue COOK Martin CORPAS Manuel FLANNERY Madison GARCIA Leyla GELPÍ Josep Ll GLADMAN Simon GOBLE Carole FERREIRO Montserrat González GONZALEZ-BELTRAN Alejandra GRIFFIN Philippa C GRÜNING Björn HAGBERG Jonas HOLUB Petr HOOFT Rob ISON Jon KATZ Daniel S LESKOŠEK Brane GÓMEZ Federico López OLIVEIRA Luis J MELLOR David MOSBERGEN Rowland MULDER Nicola PEREZ-RIVEROL Yasset PERGL Robert PICHLER Horst POPE Bernard SANZ Ferran SCHNEIDER Maria V STODDEN Victoria SUCHECKI Radosław SVOBODOVÁ VAŘEKOVÁ Radka TALVIK Harry-Anton TODOROV Ilian TRELOAR Andrew TYAGI Sonika GOMPEL Maarten van VAUGHAN Daniel VIA Allegra WANG Xiaochuan WATSON-HAIGH Nathan S STEVE Crouch

    Article in Periodical

    F1000Research, year: 2017, volume: 6, edition: JUN, DOI

  • LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

    SEHNAL David DESHPANDE Mandar SVOBODOVÁ VAŘEKOVÁ Radka MIR Saqib BERKA Karel MIDLIK Adam PRAVDA Lukáš VELANKAR Sameer KOČA Jaroslav

    Article in Periodical

    Nature Methods, year: 2017, volume: 14, edition: 12, DOI

2016

  • NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges

    RAČEK Tomáš PAZÚRIKOVÁ Jana SVOBODOVÁ VAŘEKOVÁ Radka GEIDL Stanislav KŘENEK Aleš FALGINELLA Francesco Luca HORSKÝ Vladimír HEJRET Václav KOČA Jaroslav

    Article in Periodical

    Journal of Cheminformatics, year: 2016, volume: 8, edition: October, DOI

  • Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

    ADAMS Paul D. AERTGEERTS Kathleen BAUER Cary BELL Jeffrey A. BERMAN Helen M. BHAT Talapady N. BLANEY Jeff M. BOLTON Evan BRICOGNE Gerard BROWN David BURLEY Stephen K. CASE David A. CLARK Kirk L. DARDEN Tom EMSLEY Paul FEHER Victoria A. FENG Zukang GROOM Colin R. HARRIS Seth F. HENDLE Jorg HOLDER Thomas JOACHIMIAK Andrzej KLEYWEGT Gerard J. KROJER Tobias MARCOTRIGIANO Joseph MARK Alan E. MARKLEY John L. MILLER Matthew MINOR Wladek MONTELIONE Gaetano T. MURSHUDOV Garib NAKAGAWA Atsushi NAKAMURA Haruki NICHOLLS Anthony NICKLAUS Marc NOLTE Robet T. PADYANA Anil K. PEISHOFF Catherine E. PIENIAZEK Susan READ Randy J. SHAO Chenghua SHERIFF Steven SMART Oliver SOISSON Stephen SPURLINO John STOUCH Terry SVOBODOVÁ VAŘEKOVÁ Radka TEMPEL Wolfram TERWILLIGER Thomas C. TRONRUD Dale VELANKAR Sameer WARD Suzanna C. WARREN Gregory L. WESTBROOK John D. WILLIAMS Pamela YANG Huanwang YOUNG Jasmine

    Article in Periodical

    Structure, year: 2016, volume: 24, edition: 4, DOI

  • The Eighth Central European Conference “Chemistry towards Biology”: Snapshot

    PERCZEL András ATANASOV Atanas G. SKLENÁŘ Vladimír NOVÁČEK Jiří PAPOUŠKOVÁ Veronika KADEŘÁVEK Pavel ŽÍDEK Lukáš KOZLOWSKI Henryk WATLY Joanna HECEL Aleksandra KOLKOWSKA Paulina KOČA Jaroslav SVOBODOVÁ VAŘEKOVÁ Radka PRAVDA Lukáš SEHNAL David HORSKÝ Vladimír GEIDL Stanislav ENRIZ Ricardo D. MATĚJKA Pavel JENIŠTOVÁ Adéla DENDISOVÁ Marcela KOKAISLOVÁ Alžběta WEISSIG Volkmar OLSEN Mark COFFEY Aidan AJUEBOR Jude KEARY Ruth SANZ-GAITERO Marta VAN RAAIJ Mark J. MCAULIFFE Olivia WALTENBERGER Birgit MOCAN Andrei ŠMEJKAL Karel HEISS Elke H. DIEDERICH Marc MUSIOL Robert KOŠMRLJ Janez POLANSKI Jaroslaw JAMPÍLEK Josef

    Article in Periodical

    MOLECULES, year: 2016, volume: 21, edition: 10, DOI

  • Tools and data services registry: a community effort to document bioinformatics resources

    ISON Jon RAPACKI Kristoffer MENAGER Herve KALAS Matus RYDZA Emil CHMURA Piotr ANTHON Christian BEARD Niall BERKA Karel BOLSER Dan BOOTH Tim BRETAUDEAU Anthony BREZOVSKÝ Jan CASADIO Rita CESARENI Gianni COPPENS Frederik CORNELL Michael CUCCURU Gianmauro DAVIDSEN Kristian DELLA VEDOVA Gianluca DOGAN Tunca DOPPELT-AZEROUAL Olivia EMERY Laura GASTEIGER Elisabeth GATTER Thomas GOLDBERG Tatyana GROSJEAN Marie GRUNING Bjoern HELMER-CITTERICH Manuela IENASESCU Hans IOANNIDIS Vassilios JESPERSEN Martin Closter JIMENEZ Rafael JUTY Nick JUVAN Peter KOCH Maximilian LAIBE Camille LI Jing-Woei LICATA Luana MAREUIL Fabien MICETIC Ivan FRIBORG Rune Mollegaard MORETTI Sebastien MORRIS Chris MOLLER Steffen NENADIC Aleksandra PETERSON Hedi PROFITI Giuseppe RICE Peter ROMANO Paolo RONCAGLIA Paola SAIDI Rabie SCHAFFERHANS Andrea SCHWAMMLE Veit SMITH Callum SPEROTTO Maria Maddalena STOCKINGER Heinz SVOBODOVÁ VAŘEKOVÁ Radka TOSATTO Silvio C. E. DE LA TORRE Victor UVA Paolo VIA Allegra YACHDAV Guy ZAMBELLI Federico VRIEND Gert ROST Burkhard PARKINSON Helen LONGREEN Peter BRUNAK Soren

    Article in Periodical

    Nucleic Acids Research, year: 2016, volume: 44, edition: D1, DOI

  • Top 10 metrics for life science software good practices [version 1; referees: 2 approved]

    ARTAZA H. HONG N. C. CORPAS M. CORPUZ A. HOOFT R. JIMENEZ R. C. LESKOŠEK B. OLIVIER B. G. STOURAC J. SVOBODOVÁ VAŘEKOVÁ Radka VAN PARYS T. VAUGHAN D.

    Article in Periodical

    F1000Research, year: 2016, volume: 5, edition: August, DOI

2015

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